ISOGG 2006 Y-DNA SNP Index

Y-DNA SNP Index
The entire work is identified by the Version Number and date given on the Main Page. Directions for citing the document are given at the bottom of the Main Page.
Version History Last revision date for this specific page: 17 December 2006

aka = also known as

Disclaimer: The papers referenced here do not necessarily represent the first publication of some discoveries. In many cases, authors are including the work of others. In this document ISOGG in no way is trying to assign credit to researchers. Some of the earlier research papers have been omitted because they use older naming conventions that would require further explanation.

LINKS: Main Page Y-DNA Tree Trunk Papers Cited Glossary Listing Criteria

06 private=single individual; Cruciani et al (2006)

SNP	Hapgrp.	Comments	RefSNP ID
12f2.1 (12f2a)	J	Casanova et al (1985); Rosser et al (2000); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Di Giaicomo et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Hammer et al (2006); Karlsson et al (2006)
12f2.2 (12f2b)	D2	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
47z	O2b1a	Shinka et al (1999); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
50f2/C	K (notes)	Schienfeldt et al (2006)
50f2(P)	B2b	Jobling et al (1996); YCC (2002); Butler (2003); Jobling et al (2003)
92R7	P	Hurles et al (1999); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005); Capelli et al (2005); Karlsson et al (2006)
Apt	H2	Pandya et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)
DYS257	O3a1	Hammer et al (2001); Cruciani et al (2002); Shi et al (2005)
DYS271	E3a	aka M2, aka SY81; Seielstad et al (1994)
DYS390.1 del	C4a	Hudjashov (2006)
DYS391p	E3	YCC (2002); Jobling et al (2003); Vallone et al (2004)
DYS413≤18	J2a1	Di Giacomo et al (2004); Sengupta et al (2006)
DYS445≤7	J2a1k	Forthcoming article by Schrack, Athey, Wilson et al
DYS439 -null	R1b1c9a	aka S26, aka L1; see John McEwan's L1 SNP (aka Null DYS439)
L1	R1b1c9a	aka S26, aka Null DYS439; see John McEwan's L1 SNP (aka Null DYS439)
LINE1	O3a3	Santos et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)
LLY22g	N	YCC (2002); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)
M1	DE	aka YAP; Underhill et al (2000); Nasidze et al (2004)
M2	E3a	aka SY81, aka DYS271; Seielstad et al (1994); Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Vallone et al (2004); Alonso et al (2005); Sengupta et al (2006)	rs3893
M3	Q3	Underhill et al (1996); Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005)	rs3894
M4	M	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kayser et al (2006); Scheinfeldt et al (2006)	rs3895
M5	M	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001);Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)	rs3896
M6	A2	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs3897
M7	O3a4	Underhill et al (1997); Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)	rs3898
M8	C1	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Hammer et al (2006); Sengupta et al (2006)	rs3899
M9	K	Underhill et al (1997); Su et al (1999); Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Thangaraj et al (2003); Behar et al (2004); Deng et al (2004); Flores et al (2004); Nasidze et al (2004); Shen et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Hammer et al (2006); Karlsson et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)	rs3900
M10	E3a6	Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs3901
M11	L	Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Thangaraj et al (2003); Cinnioglu et al (2004)	rs3902
M12	J2b	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Alonso et al (2005); Hammer et al (2005); Sengupta et al (2006)	rs3903
M13	A3b2	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004);Hammer et al (2005)	rs3904
M14	A2	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs3905
M15	D1	Underhill et al (1997); Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006); Sengupta et al (2006)	rs3906
M16	M2a1	Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Scheinfeldt et al (2006)	rs3907
M17	R1a1	Underhill et al (1997); Su et al (1999); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Deng et al (2004); Nasidze et al (2004); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Karlsson et al (2006); Sengupta et al (2006)	rs3908
M18	R1b1a	private; Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs3909
M19	Q3a	Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs3910
M20	L	Underhill et al (1997); Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)	rs3911
M21	I1a2	private=single individual; Underhill et al (1997); Underhill et al (2000); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Rootsi et al (2004)	rs3912
M22	L	Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs3913
M23	A2	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M25	Q2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004)
M26	I1b1b	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Rootsi et al (2004); Alonso et al (2005); Capelli et al (2005); Karlsson et al (2006)	rs2032629
M27	L1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003)
M28	A3a	private=single individual in Ethopia: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M29	A2	aka P3 or PN3; Underhill et al (2000)
M30	B2b3	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M31	A1	Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Vallone et al (2004); Hammer et al (2005)
M32	A3	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005)
M33	E1	Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004); Semino et al (2004); Vallone et al (2004)
M34	E3b1c1	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004); Flores et al (2004); Shen et al (2004)
M35	E3b1	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Flores et al (2004); Cruciani et al (2004); Semino et al (2004); Vallone et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Karlsson et al (2006); Sengupta et al (2006)
M36	H1a1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M37	R1b1c1	private; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M38	C2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006)
M39	H1a3	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)
M40	E	aka SRY4064 or SRY 8299; Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Deng et al (2004)	rs9786608
M41	E2a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Jobling et al (2003)
M42	BR	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004)	rs2032630
M43	B2a2a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M44	E1a	Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M45	P	Su et al (1999); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Thangaraj et al (2003); Deng et al (2004); Nasidze et al (2004); Shen et al (2004); Nasidze et al (2005);	rs2032631
M46	N3	aka Tat; Underhill et al (2000); Butler (2003);
M47	J2a1a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Sengupta et al (2006)
M48	C3c	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M49	A2	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032633
M50	O1a2	Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032632
M51	A3b1	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M52	H1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Sengupta et al (2006)
M54	E2b	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032620
M55	D2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)	rs2032621
M56	R1a1a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032622
M57	D2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
M58	E3a1	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004)
M59	A3a	private=single individual in Ethopia: Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M60	B	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Vallone et al (2004); Hammer et al (2005)	rs2032623
M61	L	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003)
M62	J1a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004)
M63	A3b2	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032625
M64.1 (M64a)	D2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Hammer et al (2006)	rs2032626
M64.2 (M64b)	R1a1c	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032626
M65	R1b1c2	private; private=Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M66	E3a6	Underhill et al (2000), Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032627
M67	J2a1b	(aka S51); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Di Giacomo et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Sengupta et al (2006)	rs2032628
M68	J2a1c	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004); Sengupta et al (2006)
M69	H	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)	rs2032673
M70	K2	Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Flores et al (2004); Alonso et al (2005); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006)	rs2032672
M71	A2	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032638
M72	I1a3	private=single individual; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Rootsi et al (2004)	rs2032637
M73	R1b1b	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Sengupta et al (2006)	rs2032634
M74	P	aka N12; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Scheinfeldt et al (2006)	rs2032635
M75	E2	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004); Semino et al (2004); Vallone et al (2004)	rs2032639
M76	L1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)
M77	C3c	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M78	E3b1a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005); Karlsson et al (2006); Sengupta et al (2006)
M81	E3b1b	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Alonso et al (2005)	rs2032640
M82	H1a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032675
M83	M2a2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Jobling et al (2003)	rs2032641
M84	E3b1c1a	Shen et al (2000) - see below	rs2032642
M85	E2b2	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032616
M86	C3c	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Hammer et al (2006)	rs2032643
M87	R1a1c	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032644
M88	O2a1	Su et al (1999); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004)	rs2032645
M89	F	Su et al (1999); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Deng et al (2004); Flores et al (2004); Nasidze et al (2004); Alonso et al (2005); Capelli et al (2005); Nasidze et al (2005); Karlsson et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)	rs2032652
M90	E2b	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032646
M91	A	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Hammer et al (2005)	rs2032651
M92	J2a1b1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Alonso et al (2005); Sengupta et al (2006)	rs2032648
M93	C3a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2005); Sengupta et al (2006)
M94	BR	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004)	rs2032647
M95	O2a	Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Thangaraj et al (2003); Deng et al (2004); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Sengupta et al (2006)	rs2032650
M96	E	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004)	rs9306841
M97	H1a2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M98	E2b	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M99	J2b1a1	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)
M101	O1a1	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M102	J2b1	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Semino et al (2004); Sengupta et al (2006)	rs2032608
M103	O1a2	Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032609
M104	M2a	aka P22; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kayser et al (2006)
M105	C1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032612
M106	M	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032611
M107	E3b1b1	private=single individual in Mali: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032613
M108.1 (M108a)	B2a2	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032679
M108.2 (M108b)	B2b3a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032679
M109	B2a1a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M110	O1a2	Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
M111	O2a1	Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
M112	B2b	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M113	O3a4a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)
M114	A2a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M115	B2b2	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M116.1 (M116a)	D2a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)
M116.2 (M116b)	E3a2	private=single individual in Mali: Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M117	O3a5a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)
M118	A3b2b	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M119	O1a	Su et al (1999); Underhill et al (2000); Karafet et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)
M120	Q1	Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Sengupta et al (2006)
M121	O3a1	Underhill et al (2000); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)
M122	O3	Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Thangaraj et al (2003); Cinnioglu et al (2004); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)
M123	E3b1c	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004)
M124	R2	Underhill et al (2000); Underhill et al (2001); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Nasidze et al (2004); Nasidze et al (2005); Sengupta et al (2006)
M125	D2a1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)	rs2032614
M126	R1b1c3	private=Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032615
M127	A3b2	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M128	N1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Hammer et al (2006)
M129	B2b3	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M130	C	aka RPS4Y
M131	C1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M132	E1	Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004)	rs2032617
M133	O3a5a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)
M134	O3a5	Su et al (1999); Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Sengupta et al (2006)
M135	A2	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M136	E3b1c1a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032618
M137	J2a1d	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004); Sengupta et al (2006)
M138	H1a3	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M139	BR	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M141	A2	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M143	Q2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M144	A3b	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032619
M145	DE	Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs3848982
M146	B1a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M147	K3	private=single individual: Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M148	E3b1a3a	private=single individual in Pakistan/India: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M149	E3a3	private=single individual in South Africa: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M150	B2a	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Vallone et al (2004); Hammer et al (2005)
M151	D2a2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M152	B2a1a	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005)
M153	R1b1c4	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005)
M154	E3a4	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004)
M155	E3a5	private=single individual in Mali: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M156	E3a6	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M157	R1a1b	private=Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M158	J2a1c	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Semino et al (2004); Sengupta et al (2006)
M159	O3a3	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)
M160	R1b1c5	private; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M161	I1b1b1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
M162	O3a5a1	Underhill et al (2000); Underhill et al (2001); YCC (2002); Jobling et al (2003); Shi et al (2005)
M163	J2a1b2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)
M164	O3a2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)
M165	E3b1b2	private=single individual in the Middle East: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M166	J2a1b2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004); Sengupta et al (2006)
M167	R1b1c6	aka SRY2627; Underhill et al (2000); Underhill et al (2001)
M168	CR	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004)	rs2032595
M169	B2b2	Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032594
M170	I	Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Flores et al (2004); Nasidze et al (2004); Rootsi et al (2004); Shen et al (2004); Vallone et al (2004); Alonso et al (2005); Athey et al (2005); Capelli et al (2005); Nasidze et al (2005); Karlsson et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)	rs2032597
M171	A3b2a	private=single individual in Sudan: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)
M172	J2	Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Di Giacomo et al (2004); Flores et al (2004); Nasidze et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Sengupta et al (2006)	rs2032604
M173	R1	Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Flores et al (2004); Nasidze et al (2004) Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Sengupta et al (2006)	rs2032624
M174	D	Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Thangaraj et al (2003); Cruciani et al (2004); Deng et al (2004); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006)	rs2032602
M175	O	Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Behar et al (2004); Deng et al (2004); Rootsi (Oct 2004); Shen et al (2004); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)	rs2032678
M176	O2b	aka SRY465; Underhill et al (2001); Sengupta et al (2006)
M177	K1a	aka SRY9138; Underhill et al (2001); Kayser et al (2006)
M178	N3a	Underhill et al (2001); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Flores et al (2004); Hammer et al (2006)
M179	D2	Underhill et al (2001); Butler (2003)	rs2032596
M180	E3a	Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003)	rs2032598
M181	B	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032599
M182	B2	Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Vallone et al (2004)	rs2032601
M183	E3b1b2	Underhill et al (2001); Butler (2003)	rs2032600
M184	K2	aka USP9Y+3178; Sun et al (1999); Underhill et al (2001); Butler (2003); Repping et al (2003); Rozen et al (2003)	rs20320
M185	L	Underhill et al (2001); Butler (2003); Deng et al (2004)	rs2032607
M186	M	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032681
M188	O3a4a	Underhill et al (2000); Underhill et al (2001); Butler (2003); Deng et al (2004); Shi et al (2005)	rs2032605
M189	M	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032606
M190	A3b	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032603
M191	E3a7	Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Butler (2003); Jobling et al (2003); Semino et al (2004)	rs2032590
M192	B2b	Underhill et al (2001); Butler (2003)	rs2032662
M193	K2	Underhill et al (2001); Butler (2003)	rs2032676
M194	Q3b	Underhill et al (2001); YCC (2002); Butler (2003)	rs2032677
M195	E3a6	Underhill et al (2001); Butler (2003)	rs2032680
M196	A2	Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032591
M197	H1a1	Underhill et al (2001); Butler (2003); Sengupta et al (2006)	rs2032610
M198	R1a1	Underhill et al (2001); Butler (2003); Shen et al (2004)	rs2020857
M199	Q3c	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032589
M200	E2b2a	Underhill et al (2001); Cruciani et al (2002); Butler (2003)	rs2032593
M201	G	Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Flores et al (2004); Nasidze et al (2004); Shen et al (2004); Vallone et al (2004); Hammer et al (2005); Nasidze et al (2005); Hammer et al (2006); Karlsson et al (2006); Scheinfeldt et al (2006)	rs2032636
M202	A3b2	Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003)	rs2032649
M203	DE	Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Shen et al (2004)	rs2032653
M204	R1a1c	Underhill et al (2001); Butler (2003); Deng et al (2004)	rs2032655
M205	J2b1b	Underhill et al (2001); Butler (2003); Semino et al (2004); Sengupta et al (2006)	rs2032657
M206	A2	Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032656
M207	R	aka UTY2; Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Deng et al (2004); Shen et al (2004); Vallone et al (2004); Alonso et al (2005); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006)	rs2032658
M208	C2b	Underhill et al (2001); Butler (2003); Jobling et al (2003); Kayser et al (2003); Deng et al (2004); Kayser et al (2006); Scheinfeldt et al (2006)	rs2032659
M209	O3a4a	Underhill et al (2001); Butler (2003); Deng et al (2004); Shi et al (2005)	rs2032661
M210	C4b	Underhill et al (2001); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Deng et al (2004); Hudjashov (2006)	rs2032660
M211	B2b4b	Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032663
M212	A2	Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003)	rs2032664
M213	F	Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Deng et al (2004); Shen et al (2004); Sengupta et al (2006)	rs2032665
M214	NO	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Rootsi (Oct 2004); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006)	rs2032674
M215	E3b	Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003) Cruciani et al (2004); Semino et al (2004); Shen et al (2004)	rs2032654
M216	C	Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Deng et al (2004); Hammer et al (2005); Sengupta et al (2006)	rs2032666
M217	C3	Karafet et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Deng et al (2004); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006)	rs2032668
M218	B2a1	Underhill et al (2001); Butler (2003); Cruciani et al (2002)	rs2032671
M219	A3b2	Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Butler (2003); Jobling et al (2003)	rs2032669
M220	A3b	Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)	rs2032670
M221	J2b	Underhill et al (2001); Butler (2003); Sengupta et al (2006)	rs2032667
M222	R1b1c7	aka USP9Y+3636; Sun et al (1999); Underhill et al (2001); Jobling et al (2003); Repping et al (2003); Rozen et al (2003)	rs20321
M223	I1b2a	Underhill et al (2001); Butler (2003); Cinnioglu et al (2004); Rootsi et al (2004); Athey et al (2005); Karlsson et al (2006); Sengupta et al (2006)
M224	E3b1a1a	Underhill et al (2001); Cruciani et al (2002); Butler (2003); private=single Yemeni individual: Shen et al (2004)
M226	K5a1	Kayser et al (2006)	rs9341275
M227	I1a1	Underhill et al (2001); Rootsi et al (2004)
M230	K5	Kayser et al (2003); Hammer et al (2006); Scheinfeldt et al (2006)	rs9341277
M231	N	Cinnioglu et al (2004); Shen et al (2004); Rootsi (Oct 2004); Sengupta et al (2006)
M236	B1	Cruciani et al (2002)
M241	J2b1a	Cinnioglu et al (2004); Shen et al (2004); Sengupta et al (2006)
M242	Q	Cinnioglu et al (2004); Shen et al (2004)
M253	I1a	Cinnioglu et al (2004); Rootsi et al (2004); Athey et al (2005); Karlsson et al (2006)
M254	K5a	Kayser et al (2006)	rs9341297
M258	I	Rootsi et al (2004)
M260	J2a1b1	Sengupta et al (2006)
M265	Q1	aka N14
M267	J1	Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Shen et al (2004); Sengupta et al (2006)
M268	O2	Sengupta et al (2006)
M269	R1b1c	Cruciani et al (2002); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005); McEvoy et al (2006); Moore et al (2006); Karlsson et al (2006); Sengupta et al (2006); Notes on M269	rs9786153
M272	L2a	Shen et al (2004)
M274	L2a	M274, Regueiro et al (2006)	rs9341310
M280	J2b1a2	Semino et al (2004); Sengupta et al (2006)
M281	E3b1d	private=single individual in Ethiopia: Semino et al (2002); Jobling et al (2003) Cruciani et al (2004); Semino et al (2004)
M284	I1b2a1	Rootsi et al (2004); Athey et al (2005)
M285	G1	Cinnioglu et al (2004); Shen et al (2004); Sengupta et al (2006)
M286	G2b	Cinnioglu et al (2004)
M287	G3	Cinnioglu et al (2004)
M288	B1	Cruciani et al (2002)
M289	J2a1f	Shen et al (2004); Sengupta et al (2006)
M290	E3b1c1b	private=single Palestinian individual: Shen et al (2004)
M294	CR	Shen et al (2004)
M295	L	Shen et al (2004)
M296	M	Kayser et al (2006)	rs9341319
M297	O2a2	private=single individual in Cambodia (unpublished); Sengupta et al (2006)	rs13447345
M299	BR	Shen et al (2004)
M300	O3a6	Shi et al (2005)
M304	J	Cinnioglu et al (2004); Shen et al (2004)
M305	A3b2	Shen et al (2004)
M306	R	aka S1	rs1558843
M307	I1a	Rootsi et al (2004); Shen et al (2004)
M314	J2b	Shen et al (2004); Sengupta et al (2006)
M317	L2	Sengupta et al (2006)
M318	J2a1g	Shen et al (2004); Sengupta et al (2006)
M319	J2a1h	Shen et al (2004); Sengupta et al (2006)
M320	K2a	private=single Druze individual: Shen et al (2004)
M321	J1b1a3	Shen et al (2004); Sengupta et al (2006)
M322	J2a1a	Shen et al (2004); Sengupta et al (2006)
M323	Q5	Shen et al (2004)
M324	O3a	Shi et al (2005)
M327	J2a1b1a	Semino et al (2004); Sengupta et al (2006)
M329	E3c	private=two individuals in Ethiopia: Semino et al (2004)
M333	O3a7	Shi et al (2005)
M335	R1b1d	private=Cinnioglu et al (2004)
M339	J2a1i	Cinnioglu et al (2004); Semino et al (2004); Sengupta et al (2006)
M340	J2a2	Cinnioglu et al (2004); Semino et al (2004); Sengupta et al (2006)
M342	G1	Cinnioglu et al (2004); Shen et al (2004)
M343	R1b	Cinnioglu et al (2004)
M346	Q6	Sengupta et al (2006)<06/td>
M347	C4	Hudjashov (2006)
M349	L2b	M349, Cinnioglu et al (2004); Regueiro et al (2006)
M353	K1	Kayser et al (2006)
M356	C5	Hudjashov (2006); Seng06upta et al (2006)
M357	L3	Sengupta et al (2006)
M359.1	D2	aka P41.1
M359.2	I1b1a	aka P41.2; Cinnioglu e06t al (2004)
M365	J1b	Cinnioglu et al (2004); Semino et al (2004)
M367	J1c	Cinnioglu et al (2004); Semino et al (2004)
M368	J1c	Cinnioglu et al (2004); Semino et al (2004)
M369	J1d	Cinnioglu et al (2004); Semino et al (2004)
M370	H1b	Cinnioglu et al (2004)
M377	G5	Sengupta et al (2006)
M378	Q1a	Sengupta et al (2006)
M379	I1b2a2	Sengupta et al (2006)
M387	K1	Kayser et al (2006)
M390	J1e	Semino et al (2004)
M407	C3d	Sengupta et al (2006)
M410	J2a	Sengupta et al (2006)
M419	J2a1j	Sengupta et al (2006)
M427	F2	Sengupta et al (2006)
M428	F2	Sengupta et al (2006)
MEH1	A2	YCC (2002); Butler (2003); Jobling et al (2003)
MEH2	Q	YCC (2002); Butler (2003); Jobling et al (2003)
MSY2.1 (MSY2a)	B2b4b	Bao et al (2000); YCC (2002); Butler (2003); Jobling et al (2003)
MSY2.2 (MSY2b)	O1	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)
N1	D+	+ = See Note on Haplogroup Page; Deng et al (2004)
N2	D+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N3	D+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N4	O3a4a1	private=single individual:Deng et al (2004)
N5	O3a4a2	Deng et al (2004)
N6	O+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N7	O+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N8	O+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N9	O+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N10	O+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N11	O+	+ = See Note on Haplogroup Page; private=single individual:Deng et al (2004)
N12	P	aka M74, Deng et al (2004)	rs2032635
N14	Q1	aka M265, Deng et al (2004)
P1	E3a	aka PN1; Hammer (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005)
P2	E3	aka PN2; Hammer (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); B ehar et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005)
P3	A2	aka PN3, aka M29; Hammer (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003)
P4	A2	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
P5	A2	YCC (2002); Butler (2003); Jobling et al (2003)
P6	B2b1	Hammer et al (2001); YCC (2002); Butler (2003);
P7	B2b4	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
P8	B2b4a	YHammer et al (2001); CC (2002); Butler (2003); Jobling et al (2003)
P9	CR	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005)
P12	D2	YCC (2002); Jobling et al (2003)
P14	F	Hammer et al (2000); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)
P15	G2	Hammer et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005); Sengupta et al (2006)
P16	G2a	Hammer et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004)
P17	G2a1	Jobling et al (2003); Athey et al (2005)
P18	G2a1	YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004)
P19	I	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)
P20	G1a	YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004)
P21	N3a1	YCC (2002); Butler (2003); Jobling et al (2003)
P22	M2a	aka M104 see also DYS257, Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Scheinfeldt et al (2006)
P25	R1b1	Hammer et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Vallone et al (2004); Hammer et al (2005); Notes on P25	rs150173
P27	P	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)
P28	A2b	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)
P29	E	YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004)
P30	I1a	YCC (2002); Jobling et al (2003); Hammer et al (2005)
P31	O2	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)
P32	B2a1a	YCC (2002); Jobling et al (2003)
P33	C2a	Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
P34	M1	Jobling et al (2003); Kayser et al (2006)
P35	M	YCC (2002); Jobling et al (2003)
P36	Q	YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)
P37.1 (P37a)	D2	YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
P37.2 (P37b)	I1b1	YCC (2002); Jobling et al (2003); Cinnioglu et al (2004); Rootsi et al (2004); Athey et al (2005); Hammer et al (2005)
P38	I1	YCC (2002); Jobling et al (2003); Athey et al (2005)
P39	C3b	YCC (2002); Jobling et al (2003); Hammer et al (2005)
P40	I1a	YCC (2002); Jobling et al (2003)
P41.1 (P41a)	D2	aka M359.1; YCC (2002); Jobling et al (2003); Hammer et al (2006)
P41.2 (P41b)	I1b1a	aka M359.2; YCC (2002); Jobling et al (2003)
P42	D2a1a	YCC (2002); Jobling et al (2003); Hammer et al (2006)
P43	N2	Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)
P44	C3	YCC (2002); Butler (2003); Jobling et al (2003)
P45	E2b1	FTDNA 2005 Tree
P46	E3a	FTDNA 2005 Tree
P47	D3	Hammer et al (2006)
P48	Q4	FTDNA 2005 Tree
P49	O2b1	Hammer et al (2006)
P51	M1a	YCC (2002)
P53.2 (P53b)	D2a1b	FTDNA 2005 Tree
P57	K (See note)	FTDNA 2005 Tree
P60	K4	P60: FTDNA 2005 Tree
P61	K (See note)	FTDNA 2005 Tree
P63	N2a	FTDNA 2005 Tree
P66	R1b1c8	private; FTDNA 2005 Tree
P75	E4	FTDNA 2005 Tree
P78	I1b2a3K6	FTDNA 2005 Tree; Scheinfeldt et al (2006)
P79	K6	FTDNA 2005 Tree
P87	M2	FTDNA 2005 Tree; Scheinfeldt et al (2006)
P91	F1	FTDNA 2005 Tree
P95	I1b2a4	FTDNA 2005 Tree
P101	O3a5b	FTDNA 2005 Tree
P104	F1	FTDNA 2005 Tree
P107	R1b1c+	+ = See Note on Haplogroup Page; private=not observed
P117	K7	FTDNA 2005 Tree; Scheinfeldt et al (2006)
PK1	A2	Mohyuddin et al (2006)
PK2	C+	+ = See Note on Haplogroup Page; Mohyuddin et al (2006)
PK3	L3a	private=small tribal group in Pakistan; Mohyuddin et al (2006)
PK4	O2a1a	private=small tribal group in Pakistan; Mohyuddin et al (2006)
PK5	R1a1+	+ = See Note on Haplogroup Page; private=two individuals with identical haplotypes in Pakistan; Mohyuddin et al (2006)
PN1	E3a	aka P1; Underhill et al (2001); Semino et al (2002)
PN2	E3	aka P2; Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Shen et al (2004)
PN3	A2	aka P3, aka M29;Underhill et al (2001); Semino et al (2002); Cruciani et al (2002)
RPS4Y	C	aka M130; Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006)
S1	R	aka M306; SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S2	IJ	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S3	R1b1c	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S4	R	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S6	J	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S8	R	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S9	R	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S10	R1b1c	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S13	R1b1c	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S17	R1b1c	SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.
S21	R1b1c9	SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group; aka U106 in Sims et al (2007)	rs16981293
S22	IJ	Ethnoancestry (Genealogy-DNA Rootsweb List, 30 November 2005); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S23	I1b2	Ethnoancestry (Genealogy-DNA Rootsweb List, 18 November 2005); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S24	I1b2a	Ethnoancestry (Genealogy-DNA Rootsweb List, 18 November 2005); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S26	R1b1c9a	aka L1, aka Null DYS439; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S28	R1b1c10	SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group; aka U152 in Sims et al (2007)	rs1236440
S29	R1b1c9b	SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group; aka U198 in Sims et al (2007)	rs17222279
S30	I1b2	Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S31	I1b	Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S32	I1b2	Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S33	I1b2	Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S34	J	SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S35	J	SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S44	R1b1c10	private; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S50	R1b1c	private; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
S51	J2a1b	(aka M67) S51 appears in Notes; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group;
S69	R1b1c9	private; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.
SRY465 (SRY+465)	O2b	aka M176; Shinka et al (1999); Underhill et al (2001); Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)
SRY1532 (SRY-1532)	BR	aka SRY10831.1
SRY1532 (SRY-1532)	R1a	aka SRY10831.2; YCC (2002)
SRY2627 (SRY-2627)	R1b1c6	aka M167; Veitia et al (1997); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005)
SRY4064 (SRY-4064)	E	aka SRY 8299 or M40; Whitfield et al (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cruciani et al (2004); Semino et al (2004); Capelli et al (2005); Hammer et al (2005); Hammer et al (2006)	rs9786608
SRY8299 (SRY-8299)	E	aka SRY4064 or M40	rs9786608
SRY9138 (SRY-9138)	K1a	aka M177; Whitfield et al (1995); Hammer et al (1998); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2006)
SRY10831.1 (SRY10831a)	BR	aka SRY1532; Whitfield et al (1995); Hammer et al (1998); Hammer et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Karlsson et al (2006)
SRY10831.2 (SRY10831b)	R1a	aka SRY1532; Hammer et al (1998); Hammer et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005); Hammer et al (2005); Karlsson et al (2006)
SY81	E3a	aka M2; Capelli et al (2005)
Tat	N3	aka M46; Zerjal et al (1997); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Flores et al (2004); Capelli et al (2005); Hammer et al (2005); Hammer et al (2006); Karlsson et al (2006); Sengupta et al (2006)
U106	R1b1c9	aka S21; Sims et al (2007)	rs16981293
U152	R1b1c10	aka S28; Sims et al (2007)	rs1236440
U174	E3a7a	Sims et al (2007)	rs16980586
U175	E3a8	Sims et al (2007)	rs16980588
U179	I	Sims et al (2007)	rs2319818
U181	E3a8a1	Sims et al (2007)	rs16980589
U186	E3a7	Sims et al (2007)	rs16980370
U198	R1b1c9b	aka S29; Sims et al (2007)	rs17222279
U209	E3a8	Sims et al (2007)	rs16980502
U247	E3a7	Sims et al (2007)	rs2068150
U250	I (Notes)	Sims et al (2007)	rs17315723
U290	E3a8	Sims et al (2007)	rs16980406
USP9Y+3636	R1b1c7	aka M222	rs20321
USP9Y+3678	K2	aka M184	rs20320
UTY2	R	aka M207	rs2032658
V6	E3b1e	Cruciani et al (2004)
V12	E3b1a1	Cruciani et al (2006)
V13	E3b1a2	Cruciani et al (2006)
V19	E3b1a3b	private=two individuals; Cruciani et al (2006)
V27	E3b1a2a
V32	E3b1a1b	Cruciani et al (2006)
YAP	DE	aka M1; Hammer and Horai (1995); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Jobling et al (2003); Kivisild et al (2003); Cruciani et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Karlsson et al 2006

Additional Resources for identifying refSNP IDs
Brion et al, Introduction of a Single Nucleodite Polymorphism-based "Major Y-chromosome Haplogroup Typing Kit" Suitable for Predicting the Geographical Origin of Male Lineages. (abstract) Electrophoresis, 26:4411-4420, 2005.
Nomenclature System - Supplementary Data from the University of Arizona

Not listed in Composite List of Papers Cited
The following documents are used simply to document the citation for particular SNPs.
Family Tree DNA (FTDNA) 2005 Y-Chromosome Phylogenetic Tree. Genealogy by Genetics, Ltd., 18 October 2004.
Shen et al, Population Genetic Implications from Sequence Variation in Four Y Chromosome Genes. PNAS, Vo. 97, No. 13: 7354-7359, June 20, 2000.

Corrections/Additions made since 10 April 2006:

S51 was added on 22 April 2006.
C4=M356 and C3d=M406 (originally these were reversed). Change made 6 May 2006.
Karlsson et al (2006) and Jobling et al (1996) was added 10 June 2006.
P79, P117, and 50f2/C added and status of M147 and P60 revised on 12 June 2006.
M205 reclassified from J2b2 to J2b1b on 14 June 2006.
S51 was reclassified as aka M67 on 6 July 2006.
M274 added provisional (L2b) along with rs#; M349 changed from private to provisional (L2a from L2/L4) on 6 July 2006.
Removed Karafet et al (2001) from P37.1 and P37.2 on 6 July 2006.
Removed Cinnioglu et al (2004) from P37.1 on 6 July 2006.
Changed M274 to L2a and M349 to L2b on 7 July 2006.
Changed clade for M148 and M224; added V12, V13. V19, V22, V27, and V32 on 13 July 2006,
Changed clade for SRY9138 and M177; added M226, M254 and M296; Put note on P47 and P61 on 9 October 2006.
Changed clade for M210 and M356; added M347 and DYS390.1 del on 9 October 2006.
Updated authors on notation for DYS445≤7 on 16 October 2006.
Added as private SNPs S44, S50, and S69; classified as private M18, M37, M65, M126, M160, and P66 on 5 December 2006.
Added rs numbers and equivalencies for S21, S28, and S29; added U106, U152, U174, U175, U179, U181, U186, U198, U209, U247, U250, and U290 with rs numbers on 17 December 2006.