Y-DNA SNP Index - 2007
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aka = also known as

Disclaimer: The papers referenced here do not necessarily represent the first publication of some discoveries. In many cases, authors are including the work of others. In this document ISOGG in no way is trying to assign credit to researchers. Some of the earlier research papers have been omitted because they use older naming conventions that would require further explanation.

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private=single individual; Cruciani et al (2006)
SNP Hapgrp. Comments RefSNP ID
12f2.1 (12f2a) J Casanova et al (1985); Rosser et al (2000); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Di Giaicomo et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Hammer et al (2006); Karlsson et al (2006)    
12f2.2 (12f2b) D2 Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)    
47z O2b1a Shinka et al (1999); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)    
50f2/C K (notes) Schienfeldt et al (2006)    
50f2(P) B2b Jobling et al (1996); YCC (2002); Butler (2003); Jobling et al (2003)    
92R7 P Hurles et al (1999); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005); Capelli et al (2005); Derenko et al (2006); Karlsson et al (2006)    
Apt H2 Pandya et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)    
DYS257 O3a1 Hammer et al (2001); Cruciani et al (2002); Shi et al (2005)    
DYS271 E3a aka M2, aka SY81; Seielstad et al (1994)    
DYS390.1 del C4a Hudjashov (2006)    
DYS391p E3 YCC (2002); Jobling et al (2003); Vallone et al (2004)    
DYS413≤18 J2a1 Di Giacomo et al (2004); Regueiro et al (2006); Sengupta et al (2006)    
DYS445≤7 J2a1k Forthcoming article by Schrack, Athey, Wilson et al    
DYS439 -null R1b1c9a aka S26, aka L1; see John McEwan's L1 SNP (aka Null DYS439)    
L1 R1b1c9a aka S26, aka Null DYS439; see John McEwan's L1 SNP (aka Null DYS439)    
LINE1 O3a3 Santos et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)    
LLY22g N YCC (2002); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)    
M1 DE aka YAP; Underhill et al (2000); Nasidze et al (2004)    
M2 E3a aka SY81, aka DYS271; Seielstad et al (1994); Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Bortolini et al (2003); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Vallone et al (2004); Alonso et al (2005); Sengupta et al (2006) rs3893
M3 Q3 Underhill et al (1996); Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Bortolini et al (2003); Butler (2003); Jobling et al (2003); Hammer et al (2005) rs3894
M4 M Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kayser et al (2006); Scheinfeldt et al (2006) rs3895
M5 M Underhill et al (1997); Underhill et al (2000); Hammer et al (2001);Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006) rs3896
M6 A2 Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Tan et al (2007) rs3897
M7 O3a4 Underhill et al (1997); Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005) rs3898
M8 C1 Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Hammer et al (2006); Sengupta et al (2006) rs3899
M9 K Underhill et al (1997); Su et al (1999); Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Bortolini et al (2003); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Thangaraj et al (2003); Behar et al (2004); Deng et al (2004); Flores et al (2004); Nasidze et al (2004); Shen et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Hammer et al (2006); Karlsson et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006); Mona et al (2007) rs3900
M10 E3a6 Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs3901
M11 L Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Thangaraj et al (2003); Cinnioglu et al (2004) rs3902
M12 J2b Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Alonso et al (2005); Hammer et al (2005); Regueiro et al (2006); Sengupta et al (2006) rs3903
M13 A3b2 Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004);Hammer et al (2005) rs3904
M14 A2 Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs3905
M15 D1 Underhill et al (1997); Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006); Sengupta et al (2006) rs3906
M16 M2a1 Underhill et al (1997); Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Scheinfeldt et al (2006) rs3907
M17 R1a1 Underhill et al (1997); Su et al (1999); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Deng et al (2004); Nasidze et al (2004); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Karlsson et al (2006); Sengupta et al (2006) rs3908
M18 R1b1a private; Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs3909
M19 Q3a Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); YCC (2002); Bortolini et al (2003); Butler (2003); Jobling et al (2003) rs3910
M20 L Underhill et al (1997); Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006) rs3911
M21 I1a2 private=single individual; Underhill et al (1997); Underhill et al (2000); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Rootsi et al (2004) rs3912
M22 L Underhill et al (1997); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs3913
M23 A2 Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M25 Q2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004)    
M26 I1b1b Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Rootsi et al (2004); Alonso et al (2005); Capelli et al (2005); Karlsson et al (2006) rs2032629
M27 L1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003)    
M28 A3a private=single individual in Ethopia: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M29 A2 aka P3 or PN3; Underhill et al (2000)    
M30 B2b3 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M31 A1 Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Vallone et al (2004); Hammer et al (2005)    
M32 A3 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005)    
M33 E1 Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004); Semino et al (2004); Vallone et al (2004)    
M34 E3b1c1 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004); Flores et al (2004); Shen et al (2004)    
M35 E3b1 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Flores et al (2004); Cruciani et al (2004); Semino et al (2004); Vallone et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Karlsson et al (2006); Sengupta et al (2006)    
M36 H1a1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M37 R1b1c1 private; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M38 C2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Mona et al (2007)    
M39 H1a3 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)    
M40 E aka SRY4064 or SRY 8299; Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Deng et al (2004) rs9786608
M41 E2a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Jobling et al (2003)    
M42 BR Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004) rs2032630
M43 B2a2a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M44 E1a Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M45 P Su et al (1999); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Bortolini et al (2003); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Thangaraj et al (2003); Deng et al (2004); Nasidze et al (2004); Shen et al (2004); Nasidze et al (2005); rs2032631
M46 N3 aka Tat; Underhill et al (2000); Butler (2003); Repping et al (2006) rs34442126
M47 J2a1a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Regueiro et al (2006); Sengupta et al (2006)    
M48 C3c Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M49 A2 Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032633
M50 O1a2 Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032632
M51 A3b1 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Repping et al (2006) rs34078768
M52 H1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Sengupta et al (2006)    
M54 E2b Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032620
M55 D2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006) rs2032621
M56 R1a1a private; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032622
M57 D2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)    
M58 E3a1 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004)    
M59 A3a private=single individual in Ethopia: Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M60 B Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Vallone et al (2004); Hammer et al (2005) rs2032623
M61 L Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Repping et al (2006) rs34289137
M62 J1a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004)    
M63 A3b2 Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032625
M64.1 (M64a) D2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Hammer et al (2006) rs2032626
M64.2 (M64b) R1a1c Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032626
M65 R1b1c2 private; private=Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M66 E3a6 Underhill et al (2000), Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032627
M67 J2a1b (aka S51); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Di Giacomo et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Regueiro et al (2006); Sengupta et al (2006) rs2032628
M68 J2a1c Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004); Sengupta et al (2006)    
M69 H Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006) rs2032673
M70 K2 Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Flores et al (2004); Alonso et al (2005); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006) rs2032672
M71 A2 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032638
M72 I1a1a private=single individual; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Rootsi et al (2004) rs2032637
M73 R1b1b Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Sengupta et al (2006) rs2032634
M74 P aka N12; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Scheinfeldt et al (2006) rs2032635
M75 E2 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004); Semino et al (2004); Vallone et al (2004) rs2032639
M76 L1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)    
M77 C3c Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M78 E3b1a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005); Karlsson et al (2006); Sengupta et al (2006)    
M81 E3b1b Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Alonso et al (2005) rs2032640
M82 H1a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032675
M83 M2a2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Jobling et al (2003) rs2032641
M84 E3b1c1a Shen et al (2000) - see below rs2032642
M85 E2b2 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032616
M86 C3c Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Hammer et al (2006) rs2032643
M87 R1a1c Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032644
M88 O2a1 Su et al (1999); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004) rs2032645
M89 F Su et al (1999); Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Deng et al (2004); Flores et al (2004); Nasidze et al (2004); Alonso et al (2005); Capelli et al (2005); Nasidze et al (2005); Karlsson et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006) rs2032652
M90 E2b Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032646
M91 A Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Hammer et al (2005) rs2032651
M92 J2a1b1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Alonso et al (2005); Regueiro et al (2006); Sengupta et al (2006) rs2032648
M93 C3a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2005); Sengupta et al (2006)    
M94 BR Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004) rs2032647
M95 O2a Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Thangaraj et al (2003); Deng et al (2004); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Sengupta et al (2006); Tan et al (2007) rs2032650
M96 E Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004) rs9306841
M97 H1a2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M98 E2b Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M99 J2b1a1 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)    
M101 O1a1 Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M102 J2b1 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Semino et al (2004); Regueiro et al (2006); Sengupta et al (2006) rs2032608
M103 O1a2 Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032609
M104 M2a aka P22; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kayser et al (2006)    
M105 C1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032612
M106 M Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032611
M107 E3b1b1 private=single individual in Mali: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032613
M108.1 (M108a) B2a2 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032679
M108.2 (M108b) B2b3a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032679
M109 B2a1a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M110 O1a2 Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)    
M111 O2a1 Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)    
M112 B2b Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M113 O3a4a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)    
M114 A2a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M115 B2b2 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M116.1 (M116a) D2a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)    
M116.2 (M116b) E3a2 private=single individual in Mali: Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M117 O3a5a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)    
M118 A3b2b Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M119 O1a Su et al (1999); Underhill et al (2000); Karafet et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006); Mona et al (2007)    
M120 Q1 Su et al (1999); Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Sengupta et al (2006)    
M121 O3a1 Underhill et al (2000); Kayser et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)    
M122 O3 Su et al (1999); Underhill et al (2000); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Thangaraj et al (2003); Cinnioglu et al (2004); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006); Mona et al (2007)    
M123 E3b1c Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004)    
M124 R2 Underhill et al (2000); Underhill et al (2001); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Nasidze et al (2004); Nasidze et al (2005); Sengupta et al (2006)    
M125 D2a1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006) rs2032614
M126 R1b1c3 private=Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032615
M127 A3b2 Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M128 N1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Hammer et al (2006)    
M129 B2b3 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M130 C aka RPS4Y; Repping et al (2006) rs35284970
M131 C1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M132 E1 Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004) rs2032617
M133 O3a5a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)    
M134 O3a5 Su et al (1999); Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Sengupta et al (2006); Tan et al (2007)    
M135 A2 Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M136 E3b1c1a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032618
M137 J2a1d Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004); Sengupta et al (2006)    
M138 H1a3 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M139 BR Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M141 A2 Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M143 Q2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M144 A3b Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032619
M145 DE Underhill et al (2000); Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs3848982
M146 B1a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M147 K3 private=single individual: Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M148 E3b1a3a private=single individual in Pakistan/India: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M149 E3a3 private=single individual in South Africa: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M150 B2a Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Vallone et al (2004); Hammer et al (2005)    
M151 D2a2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M152 B2a1a Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005)    
M153 R1b1c4 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005)    
M154 E3a4 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004)    
M155 E3a5 private=single individual in Mali: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M156 E3a6 Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M157 R1a1b private=Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M158 J2a1c Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Semino et al (2004); Sengupta et al (2006)    
M159 O3a3 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)    
M160 R1b1c5 private; Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M161 I1b1b1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
M162 O3a5a1 Underhill et al (2000); Underhill et al (2001); YCC (2002); Jobling et al (2003); Shi et al (2005)    
M163 J2a1b2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Sengupta et al (2006)    
M164 O3a2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Shi et al (2005)    
M165 E3b1b2 private=single individual in the Middle East: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M166 J2a1b2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Semino et al (2004); Sengupta et al (2006)    
M167 R1b1c6 aka SRY2627; Underhill et al (2000); Underhill et al (2001)    
M168 CR Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004) rs2032595
M169 B2b2 Underhill et al (2000); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032594
M170 I Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Flores et al (2004); Nasidze et al (2004); Rootsi et al (2004); Shen et al (2004); Vallone et al (2004); Alonso et al (2005); Athey et al (2005); Capelli et al (2005); Nasidze et al (2005); Karlsson et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006) rs2032597
M171 A3b2a private=single individual in Sudan: Underhill et al (2000); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003)    
M172 J2 Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Di Giacomo et al (2004); Flores et al (2004); Nasidze et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Regueiro et al (2006); Sengupta et al (2006) rs2032604
M173 R1 Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Flores et al (2004); Nasidze et al (2004) Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Sengupta et al (2006) rs2032624
M174 D Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Thangaraj et al (2003); Cruciani et al (2004); Deng et al (2004); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006) rs2032602
M175 O Underhill et al (2000); Karafet et al (2001); Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Behar et al (2004); Deng et al (2004); Rootsi (Oct 2004); Shen et al (2004); Shi et al (2005); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006) rs2032678
M176 O2b aka SRY465; Underhill et al (2001); Repping et al (2006); Sengupta et al (2006) rs11575897
M177 K1a aka SRY9138; Underhill et al (2001); Kayser et al (2006)    
M178 N3a Underhill et al (2001); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Flores et al (2004); Hammer et al (2006)    
M179 D2 Underhill et al (2001); Butler (2003) rs2032596
M180 E3a Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003) rs2032598
M181 B Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032599
M182 B2 Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Vallone et al (2004) rs2032601
M183 E3b1b2 Underhill et al (2001); Butler (2003) rs2032600
M184 K2 aka USP9Y+3178; Sun et al (1999); Underhill et al (2001); Butler (2003); Repping et al (2003); Rozen et al (2003) rs20320
M185 L Underhill et al (2001); Butler (2003); Deng et al (2004) rs2032607
M186 M Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032681
M188 O3a4a Underhill et al (2000); Underhill et al (2001); Butler (2003); Deng et al (2004); Shi et al (2005) rs2032605
M189 M Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032606
M190 A3b Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032603
M191 E3a7 Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Butler (2003); Jobling et al (2003); Semino et al (2004) rs2032590
M192 B2b Underhill et al (2001); Butler (2003) rs2032662
M193 K2 Underhill et al (2001); Butler (2003) rs2032676
M194 Q3b Underhill et al (2001); YCC (2002); Butler (2003) rs2032677
M195 E3a6 Underhill et al (2001); Butler (2003) rs2032680
M196 A2 Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032591
M197 H1a1 Underhill et al (2001); Butler (2003); Sengupta et al (2006) rs2032610
M198 R1a1 Underhill et al (2001); Butler (2003); Shen et al (2004) rs2020857
M199 Q3c Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003) rs2032589
M200 E2b2a Underhill et al (2001); Cruciani et al (2002); Butler (2003) rs2032593
M201 G Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Flores et al (2004); Nasidze et al (2004); Shen et al (2004); Vallone et al (2004); Hammer et al (2005); Nasidze et al (2005); Hammer et al (2006); Karlsson et al (2006); Scheinfeldt et al (2006) rs2032636
M202 A3b2 Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003) rs2032649
M203 DE Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Shen et al (2004) rs2032653
M204 R1a1c Underhill et al (2001); Butler (2003); Deng et al (2004) rs2032655
M205 J2b1b Underhill et al (2001); Butler (2003); Semino et al (2004); Sengupta et al (2006) rs2032657
M206 A2 Underhill et al (2001); Semino et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032656
M207 R aka UTY2; Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Deng et al (2004); Shen et al (2004); Vallone et al (2004); Alonso et al (2005); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006) rs2032658
M208 C2b Underhill et al (2001); Butler (2003); Jobling et al (2003); Kayser et al (2003); Deng et al (2004); Kayser et al (2006); Scheinfeldt et al (2006) rs2032659
M209 O3a4a Underhill et al (2001); Butler (2003); Deng et al (2004); Shi et al (2005) rs2032661
M210 C4b Underhill et al (2001); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Deng et al (2004); Hudjashov (2006) rs2032660
M211 B2b4b Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032663
M212 A2 Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003) rs2032664
M213 F Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Deng et al (2004); Shen et al (2004); Sengupta et al (2006) rs2032665
M214 NO Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Deng et al (2004); Rootsi (Oct 2004); Hammer et al (2005); Hammer et al (2006); Kayser et al (2006) rs2032674
M215 E3b Underhill et al (2001); Semino et al (2002); Butler (2003); Jobling et al (2003) Cruciani et al (2004); Semino et al (2004); Shen et al (2004) rs2032654
M216 C Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004); Deng et al (2004); Hammer et al (2005); Sengupta et al (2006) rs2032666
M217 C3 Karafet et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Deng et al (2004); Hammer et al (2005); Hammer et al (2006); Sengupta et al (2006) rs2032668
M218 B2a1 Underhill et al (2001); Butler (2003); Cruciani et al (2002) rs2032671
M219 A3b2 Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Butler (2003); Jobling et al (2003) rs2032669
M220 A3b Underhill et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003) rs2032670
M221 J2b Underhill et al (2001); Butler (2003); Sengupta et al (2006) rs2032667
M222 R1b1c7 aka USP9Y+3636; Sun et al (1999); Underhill et al (2001); Jobling et al (2003); Repping et al (2003); Rozen et al (2003), Sims et al (2007). rs20321
M223 I1b2a Underhill et al (2001); Butler (2003); Cinnioglu et al (2004); Rootsi et al (2004); Athey et al (2005); Karlsson et al (2006); Sengupta et al (2006)    
M224 E3b1a2b Underhill et al (2001); Cruciani et al (2002); Butler (2003); Shen et al (2004)    
M226 K5a1 Kayser et al (2006) rs9341275
M227 I1a1 Rootsi et al (2004)    
M230 K5 Kayser et al (2003); Hammer et al (2006); Scheinfeldt et al (2006) rs9341277
M231 N Cinnioglu et al (2004); Shen et al (2004); Rootsi (Oct 2004); Sengupta et al (2006), Rootsi et al (2007)    
M235 F Repping et al (2006) rs7067496
M236 B1 Cruciani et al (2002)    
M241 J2b1a Cinnioglu et al (2004); Shen et al (2004); Regueiro et al (2006); Sengupta et al (2006)    
M242 Q Bortolini et al (2003); Cinnioglu et al (2004); Shen et al (2004)    
M253 I1a Cinnioglu et al (2004); Rootsi et al (2004); Athey et al (2005); Karlsson et al (2006)    
M254 K5a Kayser et al (2006); Mona et al (2007) rs9341297
M258 I Rootsi et al (2004)    
M260 J2a1b1 Sengupta et al (2006)    
M265 Q1 aka N14    
M267 J1 Cinnioglu et al (2004); Di Giacomo et al (2004); Semino et al (2004); Shen et al (2004); Sengupta et al (2006); Myers et al (2007)    
M268 O2 Sengupta et al (2006)    
M269 R1b1c Cruciani et al (2002); Jobling et al (2003); Kivisild et al (2003); Cinnioglu et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005); McEvoy et al (2006); Moore et al (2006); Karlsson et al (2006); Sengupta et al (2006); Notes on M269 rs9786153
M272 K2a Shen et al (2004)    
M274 L2a M274, Regueiro et al (2006) rs9341310
M280 J2b1a2 Semino et al (2004); Sengupta et al (2006)    
M281 E3b1d private=single individual in Ethiopia: Semino et al (2002); Jobling et al (2003) Cruciani et al (2004); Semino et al (2004)    
M284 I1b2a1 Rootsi et al (2004); Athey et al (2005)    
M285 G1 Cinnioglu et al (2004); Shen et al (2004); Regueiro et al (2006); Sengupta et al (2006)    
M286 G2b Cinnioglu et al (2004)    
M287 G3 Cinnioglu et al (2004)    
M288 B1 Cruciani et al (2002)    
M289 J2a1f Shen et al (2004); Sengupta et al (2006)    
M290 E3b1c1b private=single Palestinian individual: Shen et al (2004)    
M294 CR Shen et al (2004)    
M295 L Shen et al (2004)    
M296 M Kayser et al (2006) rs9341319
M297 O2a2 private=single individual in Cambodia (unpublished); Sengupta et al (2006) rs13447345
M299 BR Shen et al (2004)    
M300 O3a6 Shi et al (2005)    
M304 J Cinnioglu et al (2004); Shen et al (2004)    
M305 A3b2 Shen et al (2004)    
M306 R aka S1 rs1558843
M307 I1a Rootsi et al (2004); Shen et al (2004)    
M314 J2b Shen et al (2004); Sengupta et al (2006)    
M317 L2 Sengupta et al (2006)    
M318 J2a1g Shen et al (2004); Sengupta et al (2006)    
M319 J2a1h Shen et al (2004); Sengupta et al (2006)    
M320 K2a private=single Druze individual: Shen et al (2004)    
M321 J2b1a3 Shen et al (2004); Sengupta et al (2006)    
M322 J2a1a Shen et al (2004); Sengupta et al (2006)    
M323 Q5 Shen et al (2004)    
M324 O3a Shi et al (2005)    
M327 J2a1b1a Semino et al (2004); Sengupta et al (2006)    
M329 E3c private=two individuals in Ethiopia: Semino et al (2004)    
M333 O3a7 Shi et al (2005)    
M335 R1b1d private=Cinnioglu et al (2004)    
M339 J2a1i Cinnioglu et al (2004); Semino et al (2004); Sengupta et al (2006)    
M340 J2a2 Cinnioglu et al (2004); Semino et al (2004); Sengupta et al (2006)    
M342 G1 Cinnioglu et al (2004); Shen et al (2004)    
M343 R1b Cinnioglu et al (2004)    
M346 Q6 Sengupta et al (2006)    
M347 C4 Hudjashov (2006)    
M349 L2b M349, Cinnioglu et al (2004); Regueiro et al (2006)    
M353 K1 Kayser et al (2006)    
M356 C5 Hudjashov (2006); Sengupta et al (2006)    
M357 L3 Sengupta et al (2006)    
M359.1 D2 aka P41.1    
M359.2 I1b1a aka P41.2; Cinnioglu et al (2004)    
M365 J1b Cinnioglu et al (2004); Semino et al (2004)    
M367 J1c Cinnioglu et al (2004); Semino et al (2004)    
M368 J1c Cinnioglu et al (2004); Semino et al (2004)    
M369 J1d Cinnioglu et al (2004); Semino et al (2004)    
M370 H1b Cinnioglu et al (2004)    
M377 G5 Regueiro et al (2006); Sengupta et al (2006)    
M378 Q1a Sengupta et al (2006)    
M379 I1b2a2 Sengupta et al (2006)    
M387 K1 Kayser et al (2006)    
M390 J1e Semino et al (2004)    
M405 R1b1c9 Myers et al (2007); aka U106 in Sims et al (2007); also aka S21 rs16981293
M407 C3d Sengupta et al (2006)    
M410 J2a Regueiro et al (2006); Sengupta et al (2006)    
M419 J2a1j Regueiro et al (2006); Sengupta et al (2006)    
M427 F2 Sengupta et al (2006)    
M428 F2 Sengupta et al (2006)    
M467 R1b1c9b Myers et al (2007); aka S29; also aka U198 Sims et al (2007) rs17222279
MEH1 A2 YCC (2002); Butler (2003); Jobling et al (2003)    
MEH2 Q YCC (2002); Butler (2003); Jobling et al (2003)    
MSY2.1 (MSY2a) B2b4b Bao et al (2000); YCC (2002); Butler (2003); Jobling et al (2003)    
MSY2.2 (MSY2b) O1 Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)    
N1 D+ + = See Note on Haplogroup Page; Deng et al (2004)    
N2 D+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N3 D+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N4 O3a4a1 private=single individual:Deng et al (2004)    
N5 O3a4a2 Deng et al (2004)    
N6 O+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N7 O+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N8 O+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N9 O+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N10 O+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N11 O+ + = See Note on Haplogroup Page; private=single individual:Deng et al (2004)    
N12 P aka M74, Deng et al (2004) rs2032635
N14 Q1 aka M265, Deng et al (2004)    
P1 E3a aka PN1; Hammer (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005)    
P2 E3 aka PN2; Hammer (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); B ehar et al (2004); Cruciani et al (2004); Flores et al (2004); Semino et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005)    
P3 A2 aka PN3, aka M29; Hammer (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003)    
P4 A2 Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
P5 A2 YCC (2002); Butler (2003); Jobling et al (2003)    
P6 B2b1 Hammer et al (2001); YCC (2002); Butler (2003);    
P7 B2b4 Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
P8 B2b4a YHammer et al (2001); CC (2002); Butler (2003); Jobling et al (2003)    
P9 CR Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005)    
P12 D2 YCC (2002); Jobling et al (2003)    
P14 F Hammer et al (2000); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)    
P15 G2 Hammer et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cinnioglu et al (2004); Shen et al (2004); Alonso et al (2005); Hammer et al (2005); Sengupta et al (2006)    
P16 G2a Hammer et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004)    
P17 G2a1 Jobling et al (2003)    
P18 G2a1 YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004)    
P19 I Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)    
P20 G1a YCC (2002); Butler (2003); Jobling et al (2003); Cinnioglu et al (2004)    
P21 N3a1 YCC (2002); Butler (2003); Jobling et al (2003)    
P22 M2a aka M104 see also DYS257, Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Scheinfeldt et al (2006)    
P25 R1b1 Hammer et al (2000); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Behar et al (2004); Cinnioglu et al (2004); Vallone et al (2004); Hammer et al (2005); Notes on P25 rs150173
P27 P Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)    
P28 A2b Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003)    
P29 E YCC (2002); Butler (2003); Jobling et al (2003); Cruciani et al (2004)    
P30 I1a YCC (2002); Jobling et al (2003); Hammer et al (2005)    
P31 O2 Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)    
P32 B2a1a YCC (2002); Jobling et al (2003)    
P33 C2a Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)    
P34 M1 Jobling et al (2003); Kayser et al (2006); Mona et al (2007)    
P35 M YCC (2002); Jobling et al (2003)    
P36 Q YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Hammer et al (2005); Hammer et al (2006)    
P37.1 (P37a) D2 YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006)    
P37.2 (P37b) I1b1 YCC (2002); Jobling et al (2003); Cinnioglu et al (2004); Rootsi et al (2004); Athey et al (2005); Hammer et al (2005)    
P38 I1 YCC (2002); Jobling et al (2003); Athey et al (2005)    
P39 C3b YCC (2002); Jobling et al (2003); Hammer et al (2005)    
P40 I1a YCC (2002); Jobling et al (2003)    
P41.1 (P41a) D2 aka M359.1; YCC (2002); Jobling et al (2003); Hammer et al (2006)    
P41.2 (P41b) I1b1a aka M359.2; YCC (2002); Jobling et al (2003)    
P42 D2a1a YCC (2002); Jobling et al (2003); Hammer et al (2006)    
P43 N2 Jobling et al (2003); Hammer et al (2005); Hammer et al (2006)    
P44 C3 YCC (2002); Butler (2003); Jobling et al (2003)    
P45 E2b1 FTDNA 2005 Tree    
P46 E3a FTDNA 2005 Tree    
P47 D3 Hammer et al (2006)    
P48 Q4 FTDNA 2005 Tree    
P49 O2b1 Hammer et al (2006)    
P51 M1a FTDNA 2005 Tree    
P53.2 (P53b) D2a1b FTDNA 2005 Tree    
P57 K (See note) FTDNA 2005 Tree    
P60 K4 P60: FTDNA 2005 Tree    
P61 K (See note) FTDNA 2005 Tree    
P63 N2a FTDNA 2005 Tree    
P66 R1b1c8 private; FTDNA 2005 Tree    
P75 E4 FTDNA 2005 Tree    
P78 I1b2a3 FTDNA 2005 Tree; Scheinfeldt et al (2006)    
P79 K6 FTDNA 2005 Tree    
P87 M2 FTDNA 2005 Tree; Scheinfeldt et al (2006)    
P91 F1 FTDNA 2005 Tree    
P95 I1b2a4 FTDNA 2005 Tree    
P101 O3a5b FTDNA 2005 Tree    
P104 F1 FTDNA 2005 Tree    
P107 R1b1c+ + = See Note on Haplogroup Page; private=not observed    
P117 K7 FTDNA 2005 Tree; Scheinfeldt et al (2006)    
PK1 A2 Mohyuddin et al (2006)    
PK2 C+ + = See Note on Haplogroup Page; Mohyuddin et al (2006)    
PK3 L3a private=small tribal group in Pakistan; Mohyuddin et al (2006)    
PK4 O2a1a private=small tribal group in Pakistan; Mohyuddin et al (2006)    
PK5 R1a1+ + = See Note on Haplogroup Page; private=two individuals with identical haplotypes in Pakistan; Mohyuddin et al (2006)    
PN1 E3a aka P1; Underhill et al (2001); Semino et al (2002)    
PN2 E3 aka P2; Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); Shen et al (2004)    
PN3 A2 aka P3, aka M29;Underhill et al (2001); Semino et al (2002); Cruciani et al (2002)    
RPS4Y C aka M130; Underhill et al (2000); Hammer et al (2001); Kayser et al (2001); Underhill et al (2001); YCC (2002); Jobling et al (2003); Kayser et al (2003); Kivisild et al (2003); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Hammer et al (2006); Kayser et al (2006); Repping et al (2006); Scheinfeldt et al (2006); Sengupta et al (2006) rs35284970
S1 R aka M306; SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S2 IJ SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S3 R1b1c SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S4 R SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S6 J SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S8 R SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S9 R SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S10 R1b1c SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S13 R1b1c SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S17 R1b1c SNP discovery and data documenting the phylogenetic position were privately communicated to the Y-DNA ISOGG Working Group.    
S21 R1b1c9 SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group; aka U106 in Sims et al (2007); also aka M405 in Myers et al (2007). rs16981293
S22 IJ Ethnoancestry (Genealogy-DNA Rootsweb List, 30 November 2005); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S23 I1b2 Ethnoancestry (Genealogy-DNA Rootsweb List, 18 November 2005); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S24 I1b2a Ethnoancestry (Genealogy-DNA Rootsweb List, 18 November 2005); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S25 P SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S26 R1b1c9a aka L1, aka Null DYS439; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S28 R1b1c10 SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group; aka U152 in Sims et al (2007) rs1236440
S29 R1b1c9b SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group; aka U198 in Sims et al (2007); also aka M467in Myers et al (2007). rs17222279
S30 I1b2 Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S31 I1b Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S32 I1b2 Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S33 I1b2 Ethnoancestry (Genealogy-DNA Rootsweb List, 11 January 2006); SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S34 J SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S35 J SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S44 R1b1c10 private; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S50 R1b1c private; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S51 J2a1b (aka M67) S51 appears in Notes; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group;    
S62 I1a SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group;    
S63 I1a SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group;    
S64 I1a SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group;    
S65 I1a SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group;    
S66 I1a SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group;    
S68 R1b1c11 SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
S69 R (Private SNPs) private; SNP discovery and data documenting the phylogenetic position were privately communicated to the ISOGG Y-DNA Working Group.    
SRY465 (SRY+465) O2b aka M176; Shinka et al (1999); Underhill et al (2001); Hammer et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Hammer et al (2006), Repping et al (2006) rs11575897
SRY1532.1 (SRY-1532) BR aka SRY10831.1    
SRY1532.2 (SRY-1532) R1a aka SRY10831.2; YCC (2002)    
SRY2627 (SRY-2627) R1b1c6 aka M167; Veitia et al (1997); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005)    
SRY4064 (SRY-4064) E aka SRY 8299 or M40; Whitfield et al (1995); Hammer et al (1998); YCC (2002); Butler (2003); Jobling et al (2003); Behar et al (2004); Cruciani et al (2004); Semino et al (2004); Capelli et al (2005); Hammer et al (2005); Hammer et al (2006) rs9786608
SRY8299 (SRY-8299) E aka SRY4064 or M40 rs9786608
SRY9138 (SRY-9138) K1a aka M177; Whitfield et al (1995); Hammer et al (1998); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kayser et al (2006)    
SRY10831.1 (SRY10831a) BR aka SRY1532; Whitfield et al (1995); Hammer et al (1998); Hammer et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Karlsson et al (2006)    
SRY10831.2 (SRY10831b) R1a aka SRY1532; Hammer et al (1998); Hammer et al (2001); Cruciani et al (2002); YCC (2002); Butler (2003); Jobling et al (2003); Flores et al (2004); Alonso et al (2005); Hammer et al (2005); Karlsson et al (2006)    
SY81 E3a aka M2; Capelli et al (2005)    
Tat N3 aka M46; Zerjal et al (1997); Hammer et al (2001); Underhill et al (2001); YCC (2002); Butler (2003); Jobling et al (2003); Kivisild et al (2003); Flores et al (2004); Capelli et al (2005); Hammer et al (2005); Hammer et al (2006); Karlsson et al (2006); Repping et al (2006); Sengupta et al (2006) rs34442126
U1 G2c2 private communication from Garvey (2007)    
U2 G private communication from Garvey (2007)    
U3 G private communication from Garvey (2007)    
U5 G2 private communication from Garvey (2007)    
U6 G private communication from Garvey (2007)    
U7 G private communication from Garvey (2007)    
U8 G2c private communication from Garvey (2007)    
U12 G private communication from Garvey (2007)    
U13 G2c2a private communication from Garvey (2007)    
U16 G2c1 private communication from Garvey (2007)    
U17 G private communication from Garvey (2007)    
U106 R1b1c9 Sims et al (2007); aka S21; also aka M405 in Myers et al (2007) rs16981293
U152 R1b1c10 aka S28; Sims et al (2007) rs1236440
U174 E3a7a Sims et al (2007) rs16980586
U175 E3a8 Sims et al (2007) rs16980588
U179 I Sims et al (2007) rs2319818
U181 E3a8a1 Sims et al (2007) rs16980589
U186 E3a7 Sims et al (2007) rs16980370
U198 R1b1c9b aka S29; Sims et al (2007); also aka M467 in Myers et al (2007). rs17222279
U209 E3a8 Sims et al (2007) rs16980502
U247 E3a7 Sims et al (2007) rs2068150
U250 I (Notes) Sims et al (2007) rs17315723
U290 E3a8a Sims et al (2007) rs16980406
USP9Y+3636 R1b1c7 aka M222 rs20321
USP9Y+3678 K2 aka M184 rs20320
UTY2 R aka M207 rs2032658
V6 E3b1e Cruciani et al (2004)    
V12 E3b1a1 Cruciani et al (2006)    
V13 E3b1a2 Cruciani et al (2006)    
V19 E3b1a3b private=two individuals; Cruciani et al (2006)    
V22 E3b1a3 Cruciani et al (2006)    
V27 E3b1a2a    
V32 E3b1a1a Cruciani et al (2006)    
V36 E3b1a2 Cruciani et al (2007)    
V65 E3b1a4 Cruciani et al (2007)    
YAP DE aka M1; Hammer and Horai (1995); Underhill et al (2001); Cruciani et al (2002); Semino et al (2002); YCC (2002); Jobling et al (2003); Kivisild et al (2003); Cruciani et al (2004); Alonso et al (2005); Capelli et al (2005); Hammer et al (2005); Nasidze et al (2005); Karlsson et al 2006; Chandrasekar et al (2007)    

Additional Resources for identifying refSNP IDs
Brion et al, Introduction of a Single Nucleodite Polymorphism-based "Major Y-chromosome Haplogroup Typing Kit" Suitable for Predicting the Geographical Origin of Male Lineages. (abstract) Electrophoresis, 26:4411-4420, 2005.
Nomenclature System - Supplementary Data from the University of Arizona

Not listed in Composite List of Papers Cited
The following documents are used simply to document the citation for particular SNPs.
Family Tree DNA (FTDNA) 2005 Y-Chromosome Phylogenetic Tree. Genealogy by Genetics, Ltd., 18 October 2004.
Shen et al, Population Genetic Implications from Sequence Variation in Four Y Chromosome Genes. PNAS, Vo. 97, No. 13: 7354-7359, June 20, 2000.

Corrections/Additions made since 20 December 2006:

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