Y-DNA SNP Index - 2012
The entire work is identified by the Version Number and date given on the
Main Page. Directions for citing the document are given at
the bottom of the Main
Page.
Version History Last
revision date for this specific page: 5 December 2012
Email
Alice Fairhurst if
you find any broken links on this page.
Sources for SNPs are now on the SNP Source subpage
Links in the Haplogroup column lead to the haplogroup page to which the snp belongs. Links from RefSNP ID (aka rs numbers)
leads to data from the National Center for Biotechnology Information (NCBI) website. Links from the Y-position NCBI36 (UCSC hg18)
lead to the Family Tree Y-DNA Chromosome Browser designed by Thomas Krahn. Links from the Y-position GRCh37 (UCSC hg19) lead to
the UC Santa Cruz browser. Chromosome Y locations based on GRCh37 are different than those based on NCBI36.
References: NCBI,
UCSC FAQ
Explanation of SNPs with Extension Numbers.
Contact person for SNP Index: David Reynolds
Additional Resources for identifying refSNP IDs
Brion et al,
Introduction of a Single Nucleodite
Polymorphism-based "Major Y-chromosome Haplogroup Typing Kit" Suitable for Predicting
the Geographical Origin of Male Lineages. (abstract)
Electrophoresis, 26:4411-4420, 2005.
Nomenclature System - Supplementary Data from the University of Arizona
Not listed in Composite List of Papers Cited
The following documents are used simply to document the citation for particular SNPs.
Family Tree DNA (FTDNA)
2005 Y-Chromosome Phylogenetic Tree. Genealogy by Genetics, Ltd., 18 October 2004.
Shen et al,
Population
Genetic Implications from Sequence Variation in Four Y Chromosome Genes.
PNAS, Vo. 97, No. 13: 7354-7359, June 20, 2000.
Corrections/Additions made since 1 January 2012:
- Added L849, L850, L852, L853, L904, Z827, Z830, Z1101, Z1107, Z1116, Z1120, Z1122, Z1123, Z1124, Z1125, Z1127, Z1130,
Z1133, Z1135, Z1146, Z1712.1 on 1 January 2012.
- Moved L791, L792 from E Investigation and L117/Page15 from Private to subclade on 5 January 2012.
- Moved L117/Page15 from an E subclade to E Investigation on 7 January 2012.
- Moved L223, L833 from G investigation to subclade and changed L296 from Investigation to Private on 7 January 2012.
- Added S190, S220.1, S220.2, S280. S299 on 7 January 2012.
- Added L705.2, L905, L906, L907, Z709 on 23 January 2012.
- Added Z724, Z1901 on 14 February 2012.
- Added L784, L986, Z287, Z288 on 16 February 2012.
- Added L985, L989, L990, L1002, L1003, L1004, L1009, L1013, M91, P97, PK1, V29, V31, V59, V64, V148, V149,
V154, V161, V164, V166, V168, V171, V172, V173, V174, V177, V187, V190, V196, V202, V203, V223, V225, V229, V233,
V235, V238, V239, V241, V250 on 16 February 2012.
- Added L602, L604, Page95, V4, V14, V25, V50, V82, V89, V98, V198, V221, V224 on 16 February 2012.
- Added L896, L979, L980, L981, L982, L983, L984, L985, L986, L987, L988, L989, L993, L994, L995, L1000, L1001, L1005, L1006,
L1007, L1008, L1010, L1011, L1012, L1014, L1015, L1016, L1017, L1018 added on 16 February 2012.
- L600, L601, L603, V150, V151, V153, V157, V158, V159, V162, V165, V167, V169, V170, V176, V181, V195 added on 16 February 2012.
- V15, V26, V28, V30, V40, V48, V53, V57, V58, V63, V67, V191, V201, V204, V214, V215, V236 added on 16 February
2012.
- Page110, V60, V61, V70, V72, V79, V80, V81, V180, V188, V192, V200, V218.1, V228, V242 added on 16 February
2012.
- V1, V51, V56, V66, V67, V97, V155, V156, V160, V193, V194, V230, V243 added on 16 February 2012.
- L411, L412, L414, L418, L419, L420, L421, L422, L423, L424, L425, L426, L427, L428, L429, L430, L436, L437,
L438, L439, L440, L441, L442, Page52.3 added on 16 February 2012.
- Added Z35, Z725 on 20 February 2012.
- Added Page52.1, Page 52.2 on 2 March 2012.
- Added Z6 on 3 March 2012.
- Added L413, L418, L438, L440, L604, L957, L962, L969, L970, L971, L977, L991, L997, L998, L999, L1053, Page10,
V218.2 on 4 March 2012.
- Added L58, L708, L709, L710, L711, L729, L839, Z14 on 9 March 2012.
- Added Z343 on 12 March 2012.
- Added Z94 on 16 March 2012.
- Added L392, L395, L804, L805, L807, L1022, L1025, L1027 on 2 April 2012.
- Added L706.2, L1029, M365.4 on 7 April 2012.
- Added Dulik et al (2011), Dulik et al (2012), Eaaswarkhanth et al (2010), Firasat et AL (2007),
Hudajashov et al (2007), Jin et al (2010), Kayser et al (2008), Li et al (2008), Malhi et al (2008),
Malyarchuk et al (2010), Xue et al (2008) on 8 April 2012.
- Added Bosch et al (2006), Delfin et al (2011), Zhong et al (2010), Zhong et al (2011) on 9 April 2012.
- Added Z346 on 17 April 2012.
- Added G1, L803, L813, L840, L1026, Z5, Z159, Z372, Z382, Z1296, Z1297, Z1298 on 26 April 2012.
- Added L556, L560, S284, S285, S286, S287, S314, S315, S316, S317, S321, S322,
S323, S324. S325, S326, S396, S398, S399, S432 on 27 April 2012.
- Added S183, S185, S238, S241, S243, S244, S246, S292, S296, S328, S329, S333, S335, S337, S392, S433,
S438, S439 on 27 April 2012.
- Added S200, S202, S205, S222, S223, S298, S339, S345, S347, S349, S467, S468 on 28 April 2012.
- Added L665, Page25, S336, Z75, Z718, Z719, Z1300, Z1338, Z1453, Z1476, Z1504, Z1935, Z1936, Z1940, Z1941,
Z1973, Z2047 on 18 June 2012.
- Added DF13, DF17, DF27, DF41, DF49, DF63, L159.3, L302, LL319.1, 343, L356, L737, L738, L739, L744, L745, L746,
S169.3, S206, S211, S218, S219, S230, S255, S263, S264, S268, S272, S274, S276,
S300, S348, S352, S353, S354, S355, S356, S368, S375, S385, S387, S388, S450, S463, S483, S492, S493, S502, S512, S515,
Z209, Z214, Z216, Z220, Z245, Z255, Z258, Z268, Z276, Z278, Z291, Z383, Z384 on 27 June 2012.
- Added L1229, Z77, Z161 on 28 June 2012.
- Added L654.2, L1256, L1257, L1258, L1259, L1260, L1261, L1262, L1263, L1264, L1265, L1266, L1268,
L1269, L1270, L1271, Z1991, Z1992, Z1993, Z2003, Z2005, Z2006, Z2013, Z2014, Z2022, Z2024 on 7 July 2012.
- Added L679, L743, L894, L895, L908, L909, L1199, L1200, L1231 on 8 July 2012.
- Changed L69 to single listing removed from IJK on 9 July 2012.
- Added L147.4, L801 on 9 July 2012.
- Added L387.2, L700, L704, L705, L706.1 on 15 July 2012.
- Added S310 on 16 July 2012.
- Added L129, L217.2, L722, L726 on 18 July 2012.
- Added L292, L782, S261/Z16, S500/Z153, Z10, Z15, Z154, Z155, Z306, Z307 on 18 July 2012.
- Added S269/Z328, S380/Z329, S505/Z330, Z327, Z331, Z332, Z333, Z334, Z335, Z336 on 19 July 2012.
- Added S381/Z81, S506/Z82, Z80, Z83 on 19 July 2012.
- Added S201/Z87, S204/Z91, S221, S224/Z645, S278.2, S342/Z88, S441/Z647, S443/Z289, S466 on 19 July 2012.
- Added S344/Z660, S446/Z661 on 19 July 2012.
- Moved M287, P76 to Private and added Malyarchuk et al(2012) on 5 August 2012.
- Added L672, L673, L880, Z106, Z109, Z112, Z118, Z119, Z124, Z125 on 5 August 2012.
- Added Z78, Z631, Z639 on 6 August 2012.
- Added David Reynolds as contact person for snp index on 7 August 2012.
- Zdded L947, L1254, L1255 on 8 August 2012.
- Added S279, S281, S394, S464, S471, S473, Z249, Z252, Z261 on 9 August 2012.
- Added S227/Z195, S225/Z225, S250, S521, S522, S523, S524, Z229 on 17 August 2012.
- Added Rocca et al (2012) as source on 17 August 2012.
- Added L66, L67, L618, L930, L931, L1019, L1020, S266, S359, S390, Z1704, Z1902, Z1919, Z1920 on 18 August 2012.
- Added L693, L812/S391, L1198 on 19 August 2012.
- Added KHS1479188, P178, TSC0077541, TSC0424987, TSC0860384, TSC1640819, Z1725 on 21 August 2012.
- Added L1237, M426, M461 on 24 August 2012.
- Added DF73, L1066, M485, M527, M547, Page57 on 28 August 2012.
- Added L666 on 30 August 2012.
- Added L405, L471, L536, L721, L741, L768, L779, L781, V231 on 13 September 2012.
- Added L659, S302, S303, S308, S309, S420, S421, S422, S424, S426, S427, Z262, Z198 on 13 September 2012.
- Added L731, L732, L733, P189.2 on 13 September 2012.
- Added L1193, L1280, L1304, L1305, L1306, L1307, Z79 on 7 October 2012.
- Added L1195, L1230, Z1216, Z2041, Z2054, Z2183, Z2184, Z2185 on 8 November 2012.
- S523 has been renamed to S474 on 8 November 2012.
- Changed L147.x to L147.5; added L147.6, L147.7, L147.8, L1308, L1323, L1324, L1325, L1326, L1327, L1328,
V20, Z2534 on 1 December 2012.
- Added Z275 on 5 December 2012.