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FONT COLORS: Newly confirmed in 2016 within subclade Confirmed within subclade Investigational items |
^ Indicates a next-generation sequencing
entry which does not yet meet quality guidelines for minimum number of
reads.
^^ Indicates an entry which does not meet quality guidelines but may be
helpful.
~ Indicates only an approximate location on the tree.
The criteria for a representative SNP printed in bold for a subclade is: traditional usage, testing one in multiple labs, and/or being found in the area of the chromosome used in recent research studies.
SNPs listed below in italics (colored black or red) are quality variants from next-generation sequencing reports consistently showing as representing that subgroup.
Contact People for Haplogroup J: J1 - Victar Mas or J2- Chris Rottensteiner or Bonnie Schrack or Tim Janzen
Links to Experimental Trees:
J1-M267 (Mas), J2-M172 (Rottensteiner), Composite Y (Banks), YFull YTree J.
J M304/Page16/PF4609,
12f2.1,
CTS26/PF4489, CTS687/PF4503, CTS852/PF4504, CTS1033/PF4507,
CTS1068/PF4508,
CTS1250/PF4510/YSC0001255,
CTS1561/PF4534, CTS2042/PF4536, CTS2769/PF4538,
CTS3543/PF4540/YSC0001268, CTS3732/PF4541, CTS3872/PF4542,
CTS3936/PF4543/YSC0001275,
CTS4204/PF4545/YSC0001278, CTS4349/PF4547, CTS4356/PF4548,
CTS4937/PF4549, CTS5280/PF4550, CTS5426/PF4552,
CTS5545.1/M3163.1/PF4554.1/YSC0001284.1, CTS5628/PF4555,
CTS5678/PF4556, CTS5691/PF4557, CTS5934,
CTS6958/PF4561, CTS7028/PF4562, CTS7229/PF4563/YSC0001286,
CTS7483/PF4565, CTS7565/M5960/PF4566, CTS7738/PF4568,
CTS7832/PF4569, CTS8078/PF4570, CTS8160/PF4571, CTS8938/PF4577,
CTS8974/PF4578, CTS9533/PF4582, CTS9877/PF4583,
CTS10446/PF4586, CTS10858/PF4612, CTS11211/PF4614, CTS11291/PF4615,
CTS11571/PF4617, CTS11750/PF4618/YSC0001250,
CTS11765/PF4620, CTS11787/PF4621/YSC0001251, CTS12047/YSC0001253,
CTS12683/PF4623, CTS12887/PF4624, CTS12913/PF4625,
F1167/PF4516/YSC0001296, F1168/PF4517,
F1181/PF4518/S35, F1381/PF4520, F1632/YSC0001301, F1633,
F1634/PF4523/YSC0001302, F1744/S4968/YSC0001303, F1826,
F1973/PF4546/YSC0001304, F2114/PF4551, F2116/PF4553/YSC0000785,
F2174/PF4558/YSC0001305, F2390/PF4560, F2502/PF4564, F2707/PF4573,
F2746/YSC0001309, F2769/PF4576, F2817/PF4579,
F2839/PF4580, F2973/PF4585/YSC0001312, F3074/PF4587/YSC0001313,
F3119/PF4588, F3138/PF4590, F3176/PF4592/YSC0001314,
F3347/PF4608/YSC0001315, F3358/PF4611/YSC0001316,
F4072/PF4509/S34,
F4299/PF4589, F4300, FGC1599/S23720/Z7822, FGC1600/Z7805,
FGC1601/Z7809, FGC1604/Z7814,
FGC1605/Z7807, FGC1606/Z7810, FGC1607/Z7803, FGC1609/Z7816,
FGC2789/Z7808, FGC2791/Z7821, FGC3271/S13155/Z7815,
FGC7618/Z7811, L60/PF4537/S6, L134/PF4539,
L778/PF4616/YSC0000236, M10434/S10188, P209/PF4584,
PF4491, PF4492, PF4494, PF4495, PF4497, PF4498,
PF4505/YSC0000064, PF4506/YSC0000066,
PF4511/YSC0001321, PF4513, PF4515, PF4519, PF4521, PF4524, PF4528,
PF4529, PF4530, PF4532, PF4533, PF4535/YSC0000165,
PF4567/YSC0000197, PF4572, PF4575, PF4591, PF4593, PF4594, PF4595,
PF4596/Z2442, PF4598, PF4602/YSC0001323,
PF4603, PF4605, PF4606, PF4607, PF4619/YSC0000239, PF4622,
S19861/Z6326, S22619/Z7820, YSC0000228, Z7802, Z7817,
Z7818, Z7829, Z7830, Z16989
•
J1 L255,
L321/PF4646,
M267/PF4782
• J1~
A186.2/ZS2136.2, BY2/FGC15178
• •
J1a CTS5368/Z2215
• • •
J1a1 M365.1^^
• • •
J1a2 L136
• • • •
J1a2a P56
• • • •
J1a2b P58/Page8/PF4698
• • • • •
J1a2b1 L92.1,
L93.1
• • • • •
J1a2b2 L147.1^^
• • • • • J1a2b2~
YSC0000081.1
• • • • •
•
J1a2b2a L222.2/S350.2
• • • • •
• J1a2b2a~
AD0000002/FGC1714, AD0000003/FGC1696, AD0000004/FGC1713,
AD0000005/FGC7, AD0000006/FGC6,
AD0000007/FGC5, AD0000008/FGC1, AD0000009/FGC2, AD0000010/FGC3,
AD0000011/FGC4, BY145/Z18223, BY241, BY252/ZS3998,
BY253/ZS4000, BY254/ZS3999, BY255/ZS4002, BY256/ZS4006, BY257/ZS4007,
BY258/ZS4001, BY259, BY260/ZS4005,
BY261/ZS4004, BY262/ZS4003, Page52.2
• • • • •
• •
J1a2b2a1 L65.2/S159.2
• • • • •
J1a2b3 L817
• • • • •
•
J1a2b3a L818/S4972
• • • • •
• •
J1a2b3a1 L816
• • •
J1a3 CTS15/Z1828
• • • •
J1a3a Z1842
•
J2 M172/Page28/PF4908,
L228/PF4895/S321
• •
J2a M410,
L152, L212/PF4988,
L559/PF4986
• • •
J2a1 L26/Page55/PF5110/S57,
F4326/L27/PF5111/S396
• • • •
J2a1a M47,
M322
• • • •
J2a1b M67/PF5137/S51
• • • • •
J2a1b1 M92,
M260/Page14
• • • • •
•
J2a1b1a L556,
L560
• • • • •
J2a1b2 M166
• • • • •
J2a1b3 L210,
L218, L227
• • • •
J2a1c M68
• • • •
J2a1d M319
• • • •
J2a1e M339
• • • •
J2a1f M419
• • • •
J2a1g P81/PF4275
• • • •
J2a1h F4168/L24/S286,
L207.1
• • • • J2a1h~
BY238.2/FGC30648.2/Y14590.2
• • • • •
J2a1h1 M158.2
• • • • •
J2a1h2 L25/PF5345/S399
• • • • •
•
J2a1h2a DYS445≤7
• • • • •
• •
J2a1h2a1 L70/PF5434/S287,
L397/PF5446, L398/PF5449/S320
• • • • •
• • •
J2a1h2a1a M137
• • • • •
• • •
J2a1h2a1b M318
• • • • •
•
J2a1h2b L243
• • • • •
•
J2a1h2c L254
• • • • •
•
J2a1h2d L192.2
• • • • •
• •
J2a1h2d1 L271
• • • •
J2a1i L88.2,
L198
• • •
J2a2 L581/PF5026/S398
• • • •
J2a2a P279/PF5065
• • • • •
J2a2a1 M340
• •
J2b L282,
M12, M102,
M221, M314/PF4939
• • J2b~
FGC3945.1/Z526.1, L729.3/M2087.3/Z15.3/Z548.3
• • •
J2b1 M205
• • •
J2b2 M241
• • • •
J2b2a L283
• • • • •
J2b2a1 Z1296
• • • • •
•
J2b2a1a Z1297,
Z1298
• • • • •
• •
J2b2a1a1 Z631,
Z639
• • • • J2b2b~
DYS455≤9
Caveats for the information from Karafet et al (2008):
NOTES:
Y-DNA haplogroup J evolved in the ancient Near East and was carried into North Africa, Europe, Central Asia, Pakistan and India. J2 lineages originated in the area known as the Fertile Crescent. The main spread of J2 into the Mediterranean area is thought to have coincided with the expansion of agricultural peoples during the Neolithic period. The timing of the demographic events that brought J2 to Central Asia, Pakistan, and India is not yet known. J1 lineages may have a more southern origin, as they are more often found in the Levant region, other parts of the Near East, and North Africa, with a sparse distribution in the southern Mediterranean flank of Europe, and in Ethiopia.
There is a descending gradient in the frequency of occurrence of haplogroup J from the Middle East toward the northwest of Europe, reaching about 3% of the population on the northwest Atlantic coast. The occurrence of J in Europe is undoubtedly due both to the Neolithic expansion and to episodic migrations, though the relative proportion of those two sources is controversial and may not be the same in different locations.
A significant fraction of Jews belong to haplogroup J, but Jews represent a small minority of the European members of the haplogroup. The "Cohen Modal Haplotype" is a specific set of six Y-STR marker values that occurs in both J1 and J2, though at a much higher frequency in J1.
References:
Adamov et al,
Defining
a New Rate Constant for Y-Chromosome SNPs basedon Full Sequencing Data,
(pdf) The Russian
Journal of Genetic Genealogy (Русская версия), 7(1): 68-89, 2015.
Adams et al,
The
Genetic Legacy of Religious Diversity and Intolerance: Paternal
Lineages of
Christians, Jews, and Muslims in the Iberian Peninsula,
American Journal of
Human Genetics, 83(6): 725-36, 2008.
Alonso et al,
The
Place of the Basques in the European
Y-chromosome Diversity Landscape. (available by subscription)
European Journal of
Human Genetics, 13:1293-1302, 2005.
Athey T W, Schrack B E,
A New Subclade
of Y Haplogroup J2b. (pdf)
Journal of Genetic Genealogy, 4(1):27-34, 2008.
Balanovsky et al,
Parallel
Evolution of Genes and Languages in the Caucasus Region.
Molecular Biology and Evolution, 13 May 2011.
Behar et al,
Contrasting
Patterns of Y Chromosome Variation in Ashkenazi Jewish and Host
Non-Jewish European Populations. (pdf) Hum Genet 114:354-365,
2004.
Behar et al,
Genome-Wide
Structure of the Jewish People.
Nature, 446:238-42, 2010.
Bertoncini et al,
The
Dual Origin of Tati-speakers from Dagestan as Written in the Genealogy
of Uniparental Variants.
(abstract) American Journal of Human Biology, Volume 24, Issue 4, pages
391-399, July/August 2012.
Biro et al,
A
Y-Chromosomal Comparison of the Madjars (Kazakhstan) and the Magyars
(Hungary),
American Journal of Physical Anthropology, 139(3): 305-10, 2009.
(abstract)
Bosch et al,
Paternal
and Maternal Lineages in the Balkans Show a Homogeneous Landscape over
Linguistis Barriers
except for the Isolated Aromuns.
Annals of Human Genetics, 70:459-87, (2006).
Capelli et al,
Population
Structure in the Mediterranean Basin: A Y Chromosome Perspective.
(pdf)
Annals of Human Genetics, 2005.
Cinnioglu et al,
Excavating Y-chromosome Haplotype Strata in Anatolia. (pdf)
Human Genetics. 114:127-148, 2004.
Cruciani et al,
A
Back Migration from Asia to Sub-Saharan Africa Is Supported
by High-Resolution Analysis of Human Y-Chromosome Haplotypes.
American Journal of Human Genetics, 70:1197-1214, 2002.
Cruciani et al,
Tracing
Past Human Male
Movements in Northern/Eastern Africa and Western Eurasia: New Clues
from Y-Chromosomal
Haplogroups E-M78 and J-M12. (pdf) Molecular Biology and
Evolution 24(6):1300-1311, 2007.
Di Giacomo et al, Y Chromosomal
Haplogroup J
as a Signature of the Post-Neolithic Colonization of Europe.
(pdf) Human Genetics,
115:357-371, 2004.
El Sibai et al,
Geographical
Structure of the Y-Chromosomal Genetic Landscape of the Levant: A
Coastal Inland
Contrast, Annals of Human Genetics, 73:568-81, 2009.
(abstract)
Ewis et al,
Two
Y-chromosome-specific
polymorphisms 12f2 and DFFRY in the Japanese population and their
relations
to other Y-polymorphisms, The Journal of Medical
Investigation, 49(1-2):44-50, 2001.
Flores et al,
Reduced Genetic
Structure of the Iberian Peninsula Revealed by Y-chromosome
Analysis: Implications for Population Demography. (available
by subscription)
European Journal of Human Genetics,
12:855-863, 2004.
Francalacci et al,
Low-Pass
DNA Sequencing of 1200 Sardinians Reconstructs European Y-Chromosome
Phylogeny.
Science: 341(6145):565-569, DOI: 10.1126/science.1237947, 2 August 2013.
Francalacci et al,
Detection
of Phylogenetically Informative Polymorphisms in the Entire Euchromatic
Portion of Human
Y Chromosome from a Sardinian Sample.
BMC Research Notes: 8(174):unpaginated, DOI: 10.1186/s13104-015-1130-z,
30 April 2015.
Hallast et al, The
Y-chromosome Tree Bursts into Leaf: 13,000 High-confidence SNPs
Covering the Majority of Known Clades,
Molecular Biology and Evolution, doi: 10.1093/molbev/msu327, 2014.
Herrera et al,
Neolithic
Patrilineal Signals Indicate that the Armenian Plateau was Repopulated
by Agriculturalists.
European Journal of Human Genetics, 10.1038/ejhg.2011.192, 2011.
Karafet et al,
New
Binary Polymorphisms Reshape and Increase Resolution of the Human
Y-Chromosomal Haplogroup
Tree. Abstract. Genome Research, published online April 2,
2008.
Supplementary
Material.
Karafet et al,
Paternal Population History of East Asia: Sources, Patterns,
and Microevolutionary Processes. (pdf) American Journal of
Human Genetics,
69:615-628, 2001.
Karmin et al,
A
Recent Bottleneck of Y chromosome Diversity Coincides with a Global
Change in Culture.
Genome Research, doi: 10.1101/gr.186684.114, published online March 13,
2015.
King et al,
The
Coming of the Greeks to Provence and Corsica: Y-Chromosome Models of
Archaic
Greek Colonization of the Western Mediterranean. BMC
Evolutionary Biology, 11:69, 2011.
King et al,
Differential
Y-chromosome Anatolian Influences on the Greek and Cretan Neolithic.
Annals of Human Genetics,
2008.
Kivisild et al,
The
Genetic Heritage of the Earliest Settlers Persists in Both Indian
Tribal and Caste
Populations. (pdf) American Journal of Human Genetics,
72:313-332, 2003.
Lippold et al,
Human
Paternal and Maternal Demographic Histories: Insights from
High-Resolution Y Chromosome and mtDNA Sequences.
Investigative Genetics, 5(13):unpaginated, September 24, 2014.
Magoon et al,
Generation
of High-resolution a priori Y-chromosome Phylogenies Using
"Next-generation" Sequencing Data
bioRxiv, doi: 10.1101/000802, December 13, 2013.
Morley,
An
Experimental Computer-Generated Y-Chromosomal Phylogeny, Leveraging
Public Geno 2.0 Results and the Current ISOGG Tree
(Internet site) version: February 7, 2014.
Myres et al, (2007),
Y-chromosome
Short Tandem Repeat DYS458.2 Non-concensus Alleles Occur Independently
in Both Binary
Haplogroups J1-M267 and R1b3-M405. Croatian Medical Journal,
48, 2007.
Nasidze et al,
MtDNA
and Y-chromosome Variation in Kurdish Groups. (abstract)
Annals of Human Genetics,
69:401-412, 2005.
Nasidze et al,
Testing
Hypotheses of Language Replacement in the Caucasus: Evidence from the
Y-chromosome, Human Genetics 112 (3): 255-61, 2003.
Regueiro et al,
Iran:
Tricontinental Nexus for Y-Chromosome Driven Migration.
(abstract)
Human Heredity, Vol. 61, No 3, 132-143, 2006.
Semino et al,
Ethiopians and Khoisan Share the Deepest Clades of the Human
Y-Chromosome Phylogeny. (pdf)
American Journal of Human Genetics, 70:265-268, 2002.
Semino et al,
Origin, Diffusion, and Differentiation of Y-Chromosome Haplogroups E
and J: Inferences on the
Neolithization of Europe and Later Migratory Events in the
Mediterranean Area. (pdf) American
Journal of Human Genetics, 74:1023-1034, 2004.
Sengupta et al,
Polarity
and Temporality of High Resolution Y-chromosome Distributions in India
Identify Both Indigenous and Exogenous Expansions and Reveal Minor
Genetic Influence
of Central Asian Pastoralists. (pdf)
American Journal of Human Genetics, 78:202-221, 2006.
Shen et al, Reconstruction
of Patrilineages and Matrilineages of Samaritans and other Israeli
Populations from Y-Chromosome
and Mitochondrial DNA Sequence Variation. (pdf) Human
Mutation, 24:248-260, 2004.
Shou et al,
Y-Chromosome
Distributions among Populations in Northwest China Identify Significant
Contribution from
Central Asian Pastoralists and Lesser Influence of Western Eurasians.
(abstract)
Journal of Human Genetics, 55: 314-22, 2010.
Van Oven et al,
Seeing
the Wood for the Trees: A Minimal Reference Phylogeny for the Human Y
Chromosome. (abstract)
Human Mutation, 35(2): 187-91, 2013. DOI: 10.1002/humu.22468.
Zalloua et al,
Y
Chromosome Diversity in Lebanon is Structured by Recent Historical
Events. (abstract)
The American Journal of Human Genetics, 82(4): 873-882, 28 March 2008.
Zhao et al,
Presence
of Three Different Paternal Lineages among North Indians: A Study of
560 Y Chromosomes. (abstract)
Annals of Human Biology, 36(1):46-59, 2009.
Additional Resources:
Corrections/Additions made since 1 January 2016:
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