Alice (Borland Genetics)

Alice Module Summary

The Alice module is one of the software modules in the Borland Genetics Web Tools and Database. This module contains classes and methods related to reverse phasing, a technique used to phase the DNA of parents using the DNA of their children by employing in-phase and evil twin pseudo-sibling kits. It provides tools for creating and managing reverse phasing workflows and for handling specific tasks within those workflows.

The module currently consists of the following classes:

Name	Extends	Description
RPSegmentExpander	SegmentExpander	Expands segments during the reverse phasing process.
ReversePhaseInputInterface	ProjectForm	Manages input interfaces for reverse phasing projects.
ReversePhasePageInputInterface	ReversePhaseInputInterface	Manages manual (not Creeper assisted) input interfaces for reverse phasing.
ReversePhasePageOutputInterface	HTMLForm	Manages manual (not Creeper assisted) output interfaces for reverse phasing.
ReversePhaseCreeperOutputInterface	HTMLForm	Manages Creeper output interfaces for reverse phasing.
ReversePhase	SpecialPhaseScript	Manages workflows for the reverse phasing tool.
RPDonorForm	DonorForm	Contains donor form elements specific to the Manual Reverse Phase tool.
RPCreeperSkin	CreeperSkin	Contains Creeper skin elements specific to the Reverse Phase workflow.