Y-DNA SNP Index - 2016

The entire work is identified by the Version Number and date given on the Main Page.   Directions for citing the document are given at the bottom of the Main Page.
Version History     Last revision date for this specific page: 3 May 2016
Email Ray Banks if you find any broken links on this page.

Links in the Haplogroup column lead to the haplogroup page to which the snp belongs. Links from RefSNP ID (aka rs numbers) leads to data from the National Center for Biotechnology Information (NCBI) website. Links from the Y-position GRCh37 Build hg19) leads to the ISOGG browser (ybrowse.isogg.org) by Thomas Krahn.
References: NCBI, UCSC FAQ

Explanation of SNPs with Extension Numbers.

The ISOGG SNP Index web page lists the SNPs which are either on the ISOGG Y Haplotree, or that are or have been under active investigation and consideration for addition to the Y Haplotree. The SNPs listed here are less than 20% of the currently known SNPs.

LINKS:  Main Page   Y-DNA Tree Trunk   Papers/Presentations Cited   Glossary   Listing Criteria

Contact person for SNP Index: Ray Banks

YBrowse Look-Ups
To do look-ups in YBrowse: In the Search Box under Landmark or Region on the left hand side of the page, you can type a SNP name such as M222, or a position such as chrY:14002414..14902414, then click on the Search button. When the search is complete, the SNP name appears under the Detail section. If you click on the SNP name in the Detail section, you will get a new window which shows the SNP mutations and other information.
Click here to open YBrowse.

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Download the ISOGG Y tree index's spreadsheet or open it with your Excel using the link under this sentence!!
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Additional Resources for identifying refSNP IDs
Brion et al, Introduction of a Single Nucleodite Polymorphism-based "Major Y-chromosome Haplogroup Typing Kit" Suitable for Predicting the Geographical Origin of Male Lineages. (abstract) Electrophoresis, 26:4411-4420, 2005.
Y Chromosome Consortium, A Nomenclature System for the Tree of Human Y-Chromosomal Binary Haplogroups. Genome Research, 12: 339-348, 2002.

Not listed in Composite List of Papers Cited
The following documents are used simply to document the citation for particular SNPs.
Family Tree DNA (FTDNA) 2005 Y-Chromosome Phylogenetic Tree. Genealogy by Genetics, Ltd., 18 October 2004.
Shen et al, Population Genetic Implications from Sequence Variation in Four Y Chromosome Genes. PNAS, Vo. 97, No. 13: 7354-7359, June 20, 2000.

Corrections/Additions made since 1 January 2016:

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